Background: Chlamydia trachomatis (CT) and Neisseria Gonorrhoeae(NG) are among the most common STIs worldwide. In Peru, routine screening and testing for CT and NG is lacking as syndromic management for urogenital infections is used. Pharyngeal and anal CT and NG infections may represent an unrecognized burden limiting effective STI control these in Peru
Methods: We conducted a cross-sectional, clinic-based study with high-risk men who have sex with men (MSM) and transgender women (TW) in Lima, Peru and screened them for pharyngeal and anal CT and NG infection (CT/NG Aptima Combo2, GenProbe-Hologic, San Diego, CA) using self-collected anal and pharyngeal swabs. Participants with positive results received treatment based on Peruvian and US-CDC guidelines. Prevalence ratios (PRs) were calculated for associations between socio-demographics, sexual risk behaviors, and infection
Results: We enrolled 133 MSM and 38 TW with a median age of 29.5 years (interquartile range (IQR) 23.4 – 37.9), a median of 5 recent male partners (IQR 2 - 10). Prevalence of CT or NG infection at either anatomical site was 29.8%. Pharyngeal CT and NG infection was 8.8% and 6.5%, respectively, while anal CT and NG infection was 16.3% and 7.6%, respectively. Among CT or NG infected participants, 74.5% had one infection at one anatomical site, 7.8% had the same infection at both sites, and the remaining 17.6% had multiple infections at multiple sites. Pharyngeal CT infection was significantly higher among TW, PR 3.03 (95% CI 1.17 – 7.87). Anal NG infection was significantly associated with younger age, PR 0.93 (95% CI 0.87 – 0.98). No significant associations were found for pharyngeal NG or anal CT infection
Conclusions: Prevalence of pharyngeal and anal CT and NG infections are considerable among high-risk Peruvian MSM/TW. In accordance with WHO guidelines for MSM and transgender sexual health, increasing access to CT/NG screening including non-genital sites should be implemented